PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_0258A9A33.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 245aa    MW: 28140.8 Da    PI: 5.2921
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_0258A9A33.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1726.4e-54711741101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw+++   +++atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r
  Traes_7BL_0258A9A33.2  71 QLQQFWAERlseVDQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAISR 158
                            89*****9877799************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            td++dflvdi+prde+
  Traes_7BL_0258A9A33.2 159 TDVYDFLVDIIPRDEM 174
                            **************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-3340165IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-3785157IPR009072Histone-fold
PfamPF008085.6E-2193156IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
CRCWWITSVS CLSLSTCSNN SGSSWYHSXX XXXXXXXXXP ANPAQLNAQN QLIYEQAQQF  60
QQQLQQQQQR QLQQFWAERL SEVDQATDFK NHTLPLARIK KIMKADEDVR MISAEAPVVF  120
AKACEIFILE LTLRSWMHTE ENKRRTLQKN DIAAAISRTD VYDFLVDIIP RDEMREEGVG  180
LPRAGQPPLL GDTPYPYYYP QQVPGAVMGY GGQQVQQGHL PYVWQDPQEQ QQQGPHAEQH  240
QSESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-41611718119HapE
4g91_C2e-41611718119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8622160.0KJ862216.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.11e-94PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG75e-71NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLW5HK081e-173W5HK08_WHEAT; Uncharacterized protein
STRINGORGLA06G0202500.19e-95(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-65nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]